Secondary structure prediction of proteins: PSIpred

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Example of a secondary structure prediction using PSIpred:


PSIPRED PREDICTION RESULTS

Key

Conf: Confidence (0=low, 9=high)
Pred: Predicted secondary structure (H=helix, E=strand, C=coil)
  AA: Target sequence

    

Conf: 920122210235557423442200278888899871363104678854687122687656
Pred: CCEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
  AA: MIMTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADL
              10        20        30        40        50        60


Conf: 787788888688708645556778787878866788456778887010221001224432
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
  AA: EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK
              70        80        90       100       110       120


Conf: 013578878888774555777343888785661001143144578611378873575228
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCEE
  AA: PVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQ
             130       140       150       160       170       180


Conf: 899999899971889998526897067699999997064868888787269999997771
Pred: EEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCC
  AA: VKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGT
             190       200       210       220       230       240


Conf: 0279
Pred: CCCC
  AA: TEIQ
        


Calculate PostScript, PDF and JPEG graphical output for this result using: 
http://insulin.brunel.ac.uk/cgi-bin/psipred/graphics/nph-view.cgi?id=9937188507706

Latest update of content: June 28, 2001

Ralf Koebnik
Institut de recherche pour le dèveloppement
UMR 5096, CNRS-UP-IRD
911, Avenue Agropolis, BP 64501
34394 Montpellier, Cedex 5
FRANCE
Phone: +33 (0)4 67 41 62 28
Fax: +33 (0)4 67 41 61 81
Email: koebnik(at)gmx.de
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