Molecular biology in the internet

Main page








Sequence comparisons

Homology searches

Motif searches

Hidden Markov models

Hydrophobicity analyses

Topology and helix packing

Protein localization

Secondary structure

Super-secondary structure

3D structure


    Databases in Molecular Biology (2001):

    An overview about molecular biological databases is given each year in the January issue of Nucleic Acids Research. The published articles are very useful to get fast and qualified answers to related questions. Please enjoy the list of articles published in January 2001:

  • Andreas D. Baxevanis
    The Molecular Biology Database Collection: an updated compilation of biological database resources
    Nucleic Acids Res. 29: 1-10

  • David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, and Barbara A. Rapp
    Database resources of the National Center for Biotechnology Information
    Nucleic Acids Res. 29: 11-16

  • Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Evelyn Camon, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Vincent Lombard, Rodrigo Lopez, Helen Parkinson, Nicole Redaschi, Peter Sterk, Peter Stoehr, and Mary Ann Tuli
    The EMBL nucleotide sequence database
    Nucleic Acids Res. 29: 17-21

  • Roman L. Tatusov, Darren A. Natale, Igor V. Garkavtsev, Tatiana A. Tatusova, Uma T. Shankavaram, Bachoti S. Rao, Boris Kiryutin, Michael Y. Galperin, Natalie D. Fedorova, and Eugene V. Koonin
    The COG database: new developments in phylogenetic classification of proteins from complete genomes
    Nucleic Acids Res. 29: 22-28

  • Winona C. Barker, John S. Garavelli, Zhenglin Hou, Hongzhan Huang, Robert S. Ledley, Peter B. McGarvey, Hans-Werner Mewes, Bruce C. Orcutt, Friedhelm Pfeiffer, Akira Tsugita, C. R. Vinayaka, Chunlin Xiao, Lai-Su L. Yeh, and Cathy Wu
    Protein Information Resource: a community resource for expert annotation of protein data
    Nucleic Acids Res. 29: 29-32

  • Evgenia V. Kriventseva, Wolfgang Fleischmann, Evgeni M. Zdobnov, and Rolf Apweiler
    CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins
    Nucleic Acids Res. 29: 33-36

  • R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, E. Birney, M. Biswas, P. Bucher, L. Cerutti, F. Corpet, M. D. R. Croning, R. Durbin, L. Falquet, W. Fleischmann, J. Gouzy, H. Hermjakob, N. Hulo, I. Jonassen, D. Kahn, A. Kanapin, Y. Karavidopoulou, R. Lopez, B. Marx, N. J. Mulder, T. M. Oinn, M. Pagni, F. Servant, C. J. A. Sigrist, and E. M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    Nucleic Acids Res. 29: 37-40

  • Daniel H. Haft, Brendan J. Loftus, Delwood L. Richardson, Fan Yang, Jonathan A. Eisen, Ian T. Paulsen, and Owen White
    TIGRFAMs: a protein family resource for the functional identification of proteins
    Nucleic Acids Res. 29: 41-43

  • Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola Mulder, Isabelle Phan, and Evgeni Zdobnov
    Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes
    Nucleic Acids Res. 29: 44-48

  • Kevin A. T. Silverstein, Elizabeth Shoop, James E. Johnson, Alan Kilian, John L. Freeman, Timothy M. Kunau, Ihab A. Awad, Margaret Mayer, and Ernest F. Retzel
    The MetaFam Server: a comprehensive protein family resource
    Nucleic Acids Res. 29: 49-51

  • Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, Hongzhan Huang, and Winona C. Barker
    iProClass: an integrated, comprehensive and annotated protein classification database
    Nucleic Acids Res. 29: 52-54

  • Sabine Dietmann, Jong Park, Cedric Notredame, Andreas Heger, Michael Lappe, and Liisa Holm
    A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3
    Nucleic Acids Res. 29: 55-57

  • János Murvai, Kristian Vlahovicek, Endre Barta, and Sándor Pongor
    The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments
    Nucleic Acids Res. 29: 58-60

  • S. Balaji, S. Sujatha, S. Sai Chetan Kumar, and N. Srinivasan
    PALI - a database of Phylogeny and ALIgnment of homologous protein structures
    Nucleic Acids Res. 29: 61-65

  • The Plasmodium Genome Database Collaborative
    PlasmoDB: An integrative database of the Plasmodium falciparum genome. Tools for accessing and analyzing finished and unfinished sequence data
    Nucleic Acids Res. 29: 66-69

  • Junichi Watanabe, Masahide Sasaki, Yutaka Suzuki, and Sumio Sugano
    FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum
    Nucleic Acids Res. 29: 70-71

  • Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Dulce Millán-Zárate, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Ernesto Pérez-Rueda, César Bonavides-Martínez, and Julio Collado-Vides
    RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12
    Nucleic Acids Res. 29: 72-74

  • Maria C. Costanzo, Matthew E. Crawford, Jodi E. Hirschman, Janice E. Kranz, Philip Olsen, Laura S. Robertson, Marek S. Skrzypek, Burkhard R. Braun, Kelley Lennon Hopkins, Pinar Kondu, Carey Lengieza, Jodi E. Lew-Smith, Michael Tillberg, and James I. Garrels
    YPDTM, PombePDTM and WormPDTM: model organism volumes of the BioKnowledgeTM Library, an integrated resource for protein information
    Nucleic Acids Res. 29: 75-79

  • Catherine A. Ball, Heng Jin, Gavin Sherlock, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Mark Schroeder, David Botstein, and J. Michael Cherry
    Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data
    Nucleic Acids Res. 29: 80-81

  • Lincoln Stein, Paul Sternberg, Richard Durbin, Jean Thierry-Mieg, and John Spieth
    WormBase: network access to the genome and biology of Caenorhabditis elegans
    Nucleic Acids Res. 29: 82-86

  • Judy Sprague, Eckehard Doerry, Sarah Douglas, and Monte Westerfield
    The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research
    Nucleic Acids Res. 29: 87-90

  • Judith A. Blake, Janan T. Eppig, Joel E. Richardson, Carol J. Bult, and J. A. Kadin
    The Mouse Genome Database (MGD): integration nexus for the laboratory mouse
    Nucleic Acids Res. 29: 91-94

  • Carol J. Bult, Debra M. Krupke, Dieter Näf, John P. Sundberg, and Janan T. Eppig
    Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database
    Nucleic Acids Res. 29: 95-97

  • Martin Ringwald, Janan T. Eppig, Dale A. Begley, John P. Corradi, Ingeborg J. McCright, Terry F. Hayamizu, David P. Hill, James A. Kadin, and Joel E. Richardson
    The Mouse Gene Expression Database (GXD)
    Nucleic Acids Res. 29: 98-101

  • Eva Huala, Allan W. Dickerman, Margarita Garcia-Hernandez, Danforth Weems, Leonore Reiser, Frank LaFond, David Hanley, Donald Kiphart, Mingzhe Zhuang, Wen Huang, Lukas A. Mueller, Debika Bhattacharyya, Devaki Bhaya, Bruno W. Sobral, William Beavis, David W. Meinke, Christopher D. Town, Chris Somerville, and Seung Yon Rhee
    The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
    Nucleic Acids Res. 29: 102-105

  • Jian Hu, Chris Mungall, Andy Law, Richard Papworth, J. Paul Nelson, Alison Brown, Irene Simpson, Shirley Leckie, David W. Burt, Alan L. Hillyard, and Alan L. Archibald
    The ARKdb: genome databases for farmed and other animals
    Nucleic Acids Res. 29: 106-110

  • Michael Gribskov, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax, and Guangfa Zhang
    PlantsP: a functional genomics database for plant phosphorylation
    Nucleic Acids Res. 29: 111-113

  • Callum J. Bell, Richard A. Dixon, Andrew D. Farmer, Raul Flores, Jeff Inman, Robert A. Gonzales, Maria J. Harrison, Nancy L. Paiva, Angela D. Scott, Jennifer W. Weller, and Gregory D. May
    The Medicago Genome Initiative: a model legume database
    Nucleic Acids Res. 29: 114-117

  • Carl A. Price and Ellen M. Reardon
    Mendel, a database of nomenclature for sequenced plant genes
    Nucleic Acids Res. 29: 118-119

  • David Lonsdale, Mark Crowe, Benjamin Arnold, and Benedict C. Arnold
    Mendel-GFDb and Mendel-ESTS: databases of plant gene families and ESTs annotated with gene family numbers and gene family names
    Nucleic Acids Res. 29: 120-122

  • Jeremy D. Peterson, Lowell A. Umayam, Tanja Dickinson, Erin K. Hickey, and Owen White
    The Comprehensive Microbial Resource
    Nucleic Acids Res. 29: 123-125

  • Axel Bernal, Uy Ear, and Nikos Kyrpides
    Genomes OnLine Database (GOLD): a monitor of genome projects world-wide
    Nucleic Acids Res. 29: 126-127

  • Nelli Shimko, Lin Liu, B. Franz Lang, and Gertraud Burger
    GOBASE: the organelle genome database
    Nucleic Acids Res. 29: 128-132

  • M. Mar Albà, David Lee, Frances M. G. Pearl, Adrian J. Shepherd, Nigel Martin, Christine A. Orengo, and Paul Kellam
    VIDA: a virus database system for the organization of animal virus genome open reading frames
    Nucleic Acids Res. 29: 133-136

  • Kim D. Pruitt and Donna R. Maglott
    RefSeq and LocusLink: NCBI gene-centered resources
    Nucleic Acids Res. 29: 137-140

  • Shaying Zhao
    A comprehensive BAC resource
    Nucleic Acids Res. 29: 141-143

  • Michael Morley, Melissa Arcaro, Joshua Burdick, Raluca Yonescu, Thomas Reid, Ilan R. Kirsch, and Vivian G. Cheung
    GenMapDB: a database of mapped human BAC clones
    Nucleic Acids Res. 29: 144-147

  • Marco Pagni, Christian Iseli, Thomas Junier, Laurent Falquet, Victor Jongeneel, and Philipp Bucher
    trEST, trGEN and Hits: access to databases of predicted protein sequences
    Nucleic Acids Res. 29: 148-151

  • Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, and J. Michael Cherry
    The Stanford Microarray Database
    Nucleic Acids Res. 29: 152-155

  • Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita, and Kousaku Okubo
    BodyMap incorporated PCR-based expression profiling data and a gene ranking system
    Nucleic Acids Res. 29: 156-158

  • John Quackenbush, Jennifer Cho, Daniel Lee, Feng Liang, Ingeborg Holt, Svetlana Karamycheva, Babak Parvizi, Geo Pertea, Razvan Sultana, and Joseph White
    The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species
    Nucleic Acids Res. 29: 159-164

  • Patricia Rodriguez-Tomé and Philip Lijnzaad
    RHdb: the Radiation Hybrid database
    Nucleic Acids Res. 29: 165-166

  • Fabrizio Damiano, Raffaele Gallerani, Sabino Liuni, Flavio Licciulli, and Luigi R. Ceci
    PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes
    Nucleic Acids Res. 29: 167-168

  • Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, and Tore Samuelsson
    SRPDB (Signal Recognition Particle Database)
    Nucleic Acids Res. 29: 169-170

  • Bjarne Knudsen, Jacek Wower, Christian Zwieb, and Jan Gorodkin
    tmRDB (tmRNA database)
    Nucleic Acids Res. 29: 171-172

  • Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr, Paul R. Saxman, Ryan J. Farris, George M. Garrity, Gary J. Olsen, Thomas M. Schmidt, and James M. Tiedje
    The RDP-II (Ribosomal Database Project)
    Nucleic Acids Res. 29: 173-174

  • Jan Wuyts, Peter De Rijk, Yves Van de Peer, Tina Winkelmans, and Rupert De Wachter
    The European Large Subunit Ribosomal RNA Database
    Nucleic Acids Res. 29: 175-177

  • Jesús García-Martínez, Ignacio Bescós, Jesús Javier Rodríguez-Sala, and Francisco Rodríguez-Valera
    RISSC: a novel database for ribosomal 16S-23S RNA genes spacer regions
    Nucleic Acids Res. 29: 178-180

  • Joel A. Klappenbach, Paul R. Saxman, James R. Cole, and Thomas M. Schmidt
    rrndb: the Ribosomal RNA Operon Copy Number Database
    Nucleic Acids Res. 29: 181-184

  • Henrik T. Yudate, Makiko Suwa, Ryotaro Irie, Hiroshi Matsui, Tetsuo Nishikawa, Yoshitaka Nakamura, Daisuke Yamaguchi, Zhang Zhi Peng, Tomoyuki Yamamoto, Keiichi Nagai, Koji Hayashi, Tetsuji Otsuki, Tomoyasu Sugiyama, Toshio Ota, Yutaka Suzuki, Sumio Sugano, Takao Isogai, and Yasuhiko Masuho
    HUNT: launch of a full-length cDNA database from the Helix Research Institute
    Nucleic Acids Res. 29: 185-188

  • Volker A. Erdmann, Miroslawa Z. Barciszewska, Maciej Szymanski, Abraham Hochberg, Nathan de Groot, and Jan Barciszewski
    The non-coding RNAs as riboregulators
    Nucleic Acids Res. 29: 189-193

  • F. H. D. van Batenburg, A. P. Gultyaev, and C. W. A. Pleij
    PseudoBase: structural information on RNA pseudoknots
    Nucleic Acids Res. 29: 194-195

  • Stefan Gräf, Dirk Strothmann, Stefan Kurtz, and Gerhard Steger
    HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns
    Nucleic Acids Res. 29: 196-198

  • John S. Garavelli, Zhenglin Hou, Nagarajan Pattabiraman, and Robert M. Stephens
    The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database
    Nucleic Acids Res. 29: 199-201

  • Jimmy Y. Huang and Douglas L. Brutlag
    The EMOTIF database
    Nucleic Acids Res. 29: 202-204

  • George Johnson and Tai Te Wu
    Kabat Database and its applications: future directions
    Nucleic Acids Res. 29: 205-206

  • Marie-Paule Lefranc
    IMGT, the international ImMunoGeneTics database
    Nucleic Acids Res. 29: 207-209

  • James Robinson, Matthew J. Waller, Peter Parham, Julia G. Bodmer, and Steven G. E. Marsh
    IMGT/HLA Database - a sequence database for the human major histocompatibility complex
    Nucleic Acids Res. 29: 210-213

  • T. N. Bhat, Philip Bourne, Zukang Feng, Gary Gilliland, Shri Jain, Veerasamy Ravichandran, Bohdan Schneider, Kata Schneider, Narmada Thanki, Helge Weissig, John Westbrook, and Helen M. Berman
    The PDB data uniformity project
    Nucleic Acids Res. 29: 214-218

  • Tamotsu Noguchi, Hideo Matsuda, and Yutaka Akiyama
    PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)
    Nucleic Acids Res. 29: 219-220

  • Roman A. Laskowski
    PDBsum: summaries and analyses of PDB structures
    Nucleic Acids Res. 29: 221-222

  • Frances M. G. Pearl, Nigel Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, and Christine A. Orengo
    A rapid classification protocol for the CATH Domain Database to support structural genomics
    Nucleic Acids Res. 29: 223-227

  • Ilya N. Shindyalov and Philip E. Bourne
    A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm
    Nucleic Acids Res. 29: 228-229

  • Wing Lok Abe Kurtz Chiu, Chun Ngai Sze, Lai Nang Ip, Sze Ki Chan, and Steve Chik Fun Au-Yeung
    NTDB: Thermodynamic Database for Nucleic Acids
    Nucleic Acids Res. 29: 230-233

  • Alan Christoffels, Antoine van Gelder, Gary Greyling, Robert Miller, Tania Hide, and Winston Hide
    STACK: Sequence Tag Alignment and Consensus Knowledgebase
    Nucleic Acids Res. 29: 234-238

  • Ioannis Xenarios, Esteban Fernandez, Lukasz Salwinski, Xiaoqun Joyce Duan, Michael J. Thompson, Edward M. Marcotte, and David Eisenberg
    DIP: The Database of Interacting Proteins: 2001 update
    Nucleic Acids Res. 29: 239-241

  • Gary D. Bader, Ian Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, and Christopher W. V. Hogue
    BIND - The Biomolecular Interaction Network Database
    Nucleic Acids Res. 29: 242-245

  • Tala Bakheet, Mathias Frevel, Bryan R. G. Williams, William Greer, and Khalid S. A. Khabar
    ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins
    Nucleic Acids Res. 29: 246-254

  • M. Burset, I. A. Seledtsov, and V. V. Solovyev
    SpliceDB: database of canonical and non-canonical mammalian splice sites
    Nucleic Acids Res. 29: 255-259

  • Hongkai Ji, Qing Zhou, Fang Wen, Huiyu Xia, Xin Lu, and Yanda Li
    AsMamDB: an alternative splice database of mammals
    Nucleic Acids Res. 29: 260-263

  • Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, and Michael C. Giddings
    RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression
    Nucleic Acids Res. 29: 264-267

  • Richard J. Roberts and Dana Macelis
    REBASE - restriction enzymes and methylases
    Nucleic Acids Res. 29: 268-269

  • Christoph Grunau, Eric Renault, André Rosenthal, and Gérard Roizes
    MethDB - a public database for DNA methylation data
    Nucleic Acids Res. 29: 270-274

  • Ian M. Morison, Croydon J. Paton, and Susan D. Cleverley
    The imprinted gene and parent-of-origin effect database
    Nucleic Acids Res. 29: 275-276

  • Ruti Hershberg, Gill Bejerano, Alberto Santos-Zavaleta, and Hanah Margalit
    PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites
    Nucleic Acids Res. 29: 277

  • Takahiro Ishii, Ken-ichi Yoshida, Goro Terai, Yasutaro Fujita, and Kenta Nakai
    DBTBS: a database of Bacillus subtilis promoters and transcription factors
    Nucleic Acids Res. 29: 278-280

  • E. Wingender, X. Chen, E. Fricke, R. Geffers, R. Hehl, I. Liebich, M. Krull, V. Matys, H. Michael, R. Ohnhäuser, M. Prüß, F. Schacherer, S. Thiele, and S. Urbach
    The TRANSFAC system on gene expression regulation
    Nucleic Acids Res. 29: 281-283

  • Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina V. Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, and Akinori Sarai
    ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another
    Nucleic Acids Res. 29: 284-287

  • Maciej Szymanski, Marzanna A. Deniziak, and Jan Barciszewski
    Aminoacyl-tRNA synthetases database
    Nucleic Acids Res. 29: 288-290

  • Sharmila Banerjee-Basu, Daniel W. Sink, and Andreas D. Baxevanis
    The Homeodomain Resource: sequences, structures, DNA binding sites and genomic information
    Nucleic Acids Res. 29: 291-293

  • Nicolas Le Novère and Jean-Pierre Changeux
    LGICdb: the ligand-gated ion channel database
    Nucleic Acids Res. 29: 294-295

  • Rami Kantor, Rhoderick Machekano, Mathew J. Gonzales, Kathryn Dupnik, Jonathan M. Schapiro, and Robert W. Shafer
    Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database: an expanded data model integrating natural language text and sequence analysis programs
    Nucleic Acids Res. 29: 296-299

  • Alan E. Levine and David L. Steffen
    OrCGDB: a database of genes involved in oral cancer
    Nucleic Acids Res. 29: 300-302

  • Jean-Loup Huret, Philippe Dessen, and Alain Bernheim
    Atlas of Genetics and Cytogenetics in Oncology and Haematology, updated
    Nucleic Acids Res. 29: 303-304

  • Olivier Cohen, Marie-Ange Mermet, and Jacques Demongeot
    HC Forum®: a web site based on an international human cytogenetic database
    Nucleic Acids Res. 29: 305-307

  • S. T. Sherry, M.-H. Ward, M. Kholodov, J. Baker, L. Phan, E. M. Smigielski, and K. Sirotkin
    dbSNP: the NCBI database of genetic variation
    Nucleic Acids Res. 29: 308-311

  • Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina V. Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, and Akinori Sarai
    rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations
    Nucleic Acids Res. 29: 312-316

  • Michael V. Osier, Kei-Hoi Cheung, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, and Kenneth K. Kidd
    ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update
    Nucleic Acids Res. 29: 317-319

  • Christian M. Ruitberg, Dennis J. Reeder, and John M. Butler
    STRBase: a short tandem repeat DNA database for the human identity testing community
    Nucleic Acids Res. 29: 320-322

  • Anne Bahr, Julie D. Thompson, J.-C. Thierry, and Olivier Poch
    BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
    Nucleic Acids Res. 29: 323-326

  • Shinsei Minoshima, Susumu Mitsuyama, Masafumi Ohtsubo, Takashi Kawamura, Sachiko Ito, Sayumi Shibamoto, Fumiaki Ito, and Nobuyoshi Shimizu
    The KMDB/MutationView: a mutation database for human disease genes
    Nucleic Acids Res. 29: 327-328

  • Wilfred W. Li, Boojala V. B. Reddy, Ilya N. Shindyalov, and Philip E. Bourne
    CKAAPs DB: a conserved key amino acid positions database
    Nucleic Acids Res. 29: 329-331

  • Catherine A. Cooper, Mathew J. Harrison, Marc R. Wilkins, and Nicolle H. Packer
    GlycoSuiteDB: a new curated relational database of glycoprotein glycan structures and their biological sources
    Nucleic Acids Res. 29: 332-335

  • Eduardo Gonzalez-Couto, Brian Hayes, and Anne Danckaert
    The life sciences Global Image Database (GID)
    Nucleic Acids Res. 29: 336-339

  • Lynda B. M. Ellis, C. Douglas Hershberger, Edward M. Bryan, and Lawrence P. Wackett
    The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes
    Nucleic Acids Res. 29: 340-343

  • Kanako Watanabe, James Nelson, Shigeaki Harayama, and Hiroaki Kasai
    ICB database: the gyrB database for identification and classification of bacteria
    Nucleic Acids Res. 29: 344-345

  • Florence Horn, Gerrit Vriend, and Fred E. Cohen
    Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems
    Nucleic Acids Res. 29: 346-349


>Latest update: May 28, 2001

Ralf Koebnik
Institut de recherche pour le dèveloppement
911, Avenue Agropolis, BP 64501
34394 Montpellier, Cedex 5
Phone: +33 (0)4 67 41 62 28
Fax: +33 (0)4 67 41 61 81
Email: koebnik(at)
Please replace (at) by @.

Home Back to previous page