Databases in the internet (2002)

	Bioinformatics Molecular biology in the internet
Main page	Appointments	Bioinformatics	Literature	Exercises	Tasks
Databases	Software	Sequence comparisons	Homology searches	Motif searches	Hidden Markov models
Hydrophobicity analyses	Topology and helix packing	Protein localization	Secondary structure	Super-secondary structure	3D structure

Databases in Molecular Biology (2002):

An overview about molecular biological databases is given each year in the January issue of Nucleic Acids Research. The published articles are very useful to get fast and qualified answers to related questions. Please enjoy the list of articles published in January 2002:

A.D. Baxevanis
The Molecular Biology Database Collection: 2002 update
Nucleic Acids Res. 30: 1-12
D.L. Wheeler, D.M. Church, A.E. Lash, D.D. Leipe, T.L. Madden, J.U. Pontius, G.D. Schuler, L.M. Schriml, T.A. Tatusova, L. Wagner, and B.A. Rapp
Database resources of the National Center for Biotechnology Information: 2002 update
Nucleic Acids Res. 30: 13-16
D.A. Benson, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, B.A. Rapp, and D.L. Wheeler
GenBank
Nucleic Acids Res. 30: 17-20
G. Stoesser, W. Baker, A. van den Broek, E. Camon, M. Garcia-Pastor, C. Kanz, T. Kulikova, R. Leinonen, Q. Lin, V. Lombard, R. Lopez, N. Redaschi, P. Stoehr, M.A. Tuli, K. Tzouvara, and R. Vaughan
The EMBL Nucleotide Sequence Database
Nucleic Acids Res. 30: 21-26
Y. Tateno, T. Imanishi, S. Miyazaki, K. Fukami-Kobayashi, N. Saitou, H. Sugawara, and T. Gojobori
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
Nucleic Acids Res. 30: 27-30
H.W. Mewes, D. Frishman, U. Gźldener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Mźnsterkštter, S. Rudd, and B. Weil
MIPS: a database for genomes and protein sequences
Nucleic Acids Res. 30: 31-34
C.H. Wu, H. Huang, L. Arminski, J. Castro-Alvear, Y. Chen, Z.-Z. Hu, R.S. Ledley, K.C. Lewis, H.-W. Mewes, B.C. Orcutt, B.E. Suzek, A. Tsugita, C.R. Vinayaka, L.-S.L. Yeh, J. Zhang, and W.C. Barker
The Protein Information Resource: an integrated public resource of functional annotation of proteins
Nucleic Acids Res. 30: 35-37
T. Hubbard, D. Barker, E. Birney, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, and M. Clamp
The Ensembl genome database project
Nucleic Acids Res. 30: 38-41
M. Kanehisa, S. Goto, S. Kawashima, and A. Nakaya
The KEGG databases at GenomeNet
Nucleic Acids Res. 30: 42-46
I. Schomburg, A. Chang, and D. Schomburg
BRENDA, enzyme data and metabolic information
Nucleic Acids Res. 30: 47-49
B.M. Ursing, F.H.J. van Enckevort, J.A.M. Leunissen, and R.J. Siezen
EXProt: a database for proteins with an experimentally verified function
Nucleic Acids Res. 30: 50-51
A. Hamosh, A.F. Scott, J. Amberger, C. Bocchini, D. Valle, and V.A. McKusick
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
Nucleic Acids Res. 30: 52-55
P.D. Karp, M. Riley, M. Saier, I.T. Paulsen, J. Collado-Vides, S.M. Paley, A. Pellegrini-Toole, C. Bonavides, and S. Gama-Castro
The EcoCyc Database
Nucleic Acids Res. 30: 56-58
P.D. Karp, M. Riley, S.M. Paley, and A. Pellegrini-Toole
The MetaCyc Database
Nucleic Acids Res. 30: 59-61
I. Moszer, L.M. Jones, S. Moreira, C. Fabry, and A. Danchin
SubtiList: the reference database for the Bacillus subtilis genome
Nucleic Acids Res. 30: 62-65
M. Fumoto, S. Miyazaki, and H. Sugawara
Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more
Nucleic Acids Res. 30: 66-68
S.S. Dwight, M.A. Harris, K. Dolinski, C.A. Ball, Gail Binkley, K.R. Christie, D.G. Fisk, L. Issel-Tarver, M. Schroeder, G. Sherlock, A. Sethuraman, S. Weng, D. Botstein, and J.M. Cherry
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
Nucleic Acids Res. 30: 69-72
A. Kumar, K.-H. Cheung, N. Tosches, P. Masiar, Y. Liu, P. Miller, and M. Snyder
The TRIPLES database: a community resource for yeast molecular biology
Nucleic Acids Res. 30: 73-75
S. Le Crom, F. Devaux, C. Jacq, and P. Marc
yMGV: helping biologists with yeast microarray data mining
Nucleic Acids Res. 30: 76-79
G. Habeler, K. Natter, G.G. Thallinger, M.E. Crawford, S.D. Kohlwein, and Z. Trajanoski
YPL.db: the Yeast Protein Localization database
Nucleic Acids Res. 30: 80-83
L. Kreppel and A.R. Kimmel
Genomic database resources for Dictyostelium discoideum
Nucleic Acids Res. 30: 84-86
A. Bahl, B. Brunk, R.L. Coppel, J. Crabtree, S.J. Diskin, M.J. Fraunholz, G.R. Grant, D. Gupta, R.L. Huestis, J.C. Kissinger, P. Labo, L. Li, S.K. McWeeney, A.J. Milgram, D.S. Roos, J. Schug, and C.J. Stoeckert Jr
PlasmoDB: the Plasmodium genome resource. AnĘintegrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished)
Nucleic Acids Res. 30: 87-90
H. Schoof, P. Zaccaria, H. Gundlach, K. Lemcke, S. Rudd, G. Kolesov, R. Arnold, H.W. Mewes, and K.F.X. Mayer
MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome
Nucleic Acids Res. 30: 91-93
F. Samson, V. Brunaud, S. Balzergue, B. Dubreucq, L. Lepiniec, G. Pelletier, M. Caboche, and A. Lecharny
FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants
Nucleic Acids Res. 30: 94-97
K. Sakata, Y. Nagamura, H. Numa, B.A. Antonio, H. Nagasaki, A. Idonuma, W. Watanabe, Y. Shimizu, I. Horiuchi, T. Matsumoto, T. Sasaki, and K. Higo
RiceGAAS: an automated annotation system and database for rice genome sequence
Nucleic Acids Res. 30: 98-102
D. Ware, P. Jaiswal, J. Ni, X. Pan, K. Chang, K. Clark, L. Teytelman, S. Schmidt, W. Zhao, S. Cartinhour, S. McCouch, and L. Stein
Gramene: a resource for comparative grass genomics
Nucleic Acids Res. 30: 103-105
The FlyBase Consortium
The FlyBase database of the Drosophila genome projects and community literature
Nucleic Acids Res. 30: 106-108
Y. Van de Peer, J.S. Taylor, J. Joseph, and A. Meyer
Wanda: a database of duplicated fish genes
Nucleic Acids Res. 30: 109-112
J.A. Blake, J.E. Richardson, C.J. Bult, J.A. Kadin, J.T. Eppig, and The Mouse Genome Database Group
The Mouse Genome Database (MGD): the model organism database for the laboratory mouse
Nucleic Acids Res. 30: 113-115
H. Bono, T. Kasukawa, M. Furuno, Y. Hayashizaki, and Y. Okazaki
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones
Nucleic Acids Res. 30: 116-118
T. Kawashima, S. Kawashima, Y. Kohara, M. Kanehisa, and K.W. Makabe
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags
Nucleic Acids Res. 30: 119-120
S.L. Martin, B.P. Blackmon, R. Rajagopalan, T.D. Houfek, R.G. Sceeles, S.O. Denn, T.K. Mitchell, D.E. Brown, R.A. Wing, and R.A. Dean
MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea
Nucleic Acids Res. 30: 121-124
S. Twigger, J. Lu, M. Shimoyama, D. Chen, D. Pasko, H. Long, J. Ginster, C.-F. Chen, R. Nigam, A. Kwitek, J. Eppig, L. Maltais, D. Maglott, G. Schuler, H. Jacob, and P.J. Tonellato
Rat Genome Database (RGD): mapping disease onto the genome
Nucleic Acids Res. 30: 125-128
A. Kerlavage, V. Bonazzi, M. di Tommaso, C. Lawrence, P. Li, F. Mayberry, R. Mural, M. Nodell, M. Yandell, J. Zhang, and P. Thomas
The Celera Discovery System^TM
Nucleic Acids Res. 30: 129-136
P.E. Hodges, P.M. Carrico, J.D. Hogan, K.E. OŐNeill, J.J. Owen, M. Mangan, B.P. Davis, J.E. Brooks, and J.I. Garrels
Annotating the human proteome: the Human Proteome Survey Database (HumanPSD^TM) and an in-depth target database for G protein-coupled receptors (GPCR-PD^TM) from Incyte Genomics
Nucleic Acids Res. 30: 137-141
C.-A.H. Roten, P. Gamba, J.-L. Barblan, and D. Karamata
Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes
Nucleic Acids Res. 30: 142-144
D.G. Gilbert
euGenes: a eukaryote genome information system
Nucleic Acids Res. 30: 145-148
S. Chien, L.T. Reiter, E. Bier, and M. Gribskov
Homophila: human disease gene cognates in Drosophila
Nucleic Acids Res. 30: 149-151
M. Hirakawa
HOWDY: an integrated database system for human genome research
Nucleic Acids Res. 30: 152-157
M. Hirakawa, T. Tanaka, Y. Hashimoto, M. Kuroda, T. Takagi, and Y. Nakamura
JSNP: a database of common gene variations in the Japanese population
Nucleic Acids Res. 30: 158-162
M. Hewett, D.E. Oliver, D.L. Rubin, K.L. Easton, J.M. Stuart, R.B. Altman, and T.E. Klein
PharmGKB: the Pharmacogenetics Knowledge Base
Nucleic Acids Res. 30: 163-165
R. Kikuno, T. Nagase, M. Waki, and O. Ohara
HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project
Nucleic Acids Res. 30: 166-168
H.M. Wain, M. Lush, F. Ducluzeau, and S. Povey
Genew: the Human Gene Nomenclature Database
Nucleic Acids Res. 30: 169-171
M. Attimonelli, D. Catalano, C. Gissi, G. Grillo, F. Licciulli, S. Liuni, M. Santamaria, G. Pesole, and C. Saccone
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002
Nucleic Acids Res. 30: 172-173
C. Lanave, F. Licciulli, M. De Robertis, A. Marolla, and M. Attimonelli
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
Nucleic Acids Res. 30: 174-175
M. Szymanski, M.Z. Barciszewska, V.A. Erdmann, and J. Barciszewski
5S Ribosomal RNA Database
Nucleic Acids Res. 30: 176-178
K.P. Williams
The tmRNA Website: invasion by an intron
Nucleic Acids Res. 30: 179-182
J. Wuyts, Y. Van de Peer, T. Winkelmans, and R. De Wachter
The European database on small subunit ribosomal RNA
Nucleic Acids Res. 30: 183-185
Y.-H. Huang, Y.-T. Chen, J.-J. Lai, S.-T. Yang, and U.-C. Yang
PALS db: Putative Alternative Splicing database
Nucleic Acids Res. 30: 186-190
M. Sakharkar, F. Passetti, J.E. de Souza, M. Long, and S.J. de Souza
ExInt: an Exon Intron Database
Nucleic Acids Res. 30: 191-194
J.V. Ponomarenko, G.V. Orlova, A.S. Frolov, M.S. Gelfand, and M.P. Ponomarenko
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
Nucleic Acids Res. 30: 195-199
V.P. Valuev, D.A. Afonnikov, M.P. Ponomarenko, L. Milanesi, and N.A. Kolchanov
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
Nucleic Acids Res. 30: 200-202
K. Onodera and U. Melcher
VirOligo: a database of virus-specific oligonucleotides
Nucleic Acids Res. 30: 203-204
J. Paces, A. Pavl’cek, and V. Paces
HERVd: database of human endogenous retroviruses
Nucleic Acids Res. 30: 205-206
R. Edgar, M. Domrachev, and A.E. Lash
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Nucleic Acids Res. 30: 207-210
H. Bono, T. Kasukawa, Y. Hayashizaki, and Y. Okazaki
READ: RIKEN Expression Array Database
Nucleic Acids Res. 30: 211-213
P.M. Haverty, Z. Weng, N.L. Best, K.R. Auerbach, L.-L. Hsiao, R.V. Jensen, and S.R. Gullans
HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues
Nucleic Acids Res. 30: 214-217
P.S. Nelson, C. Pritchard, D. Abbott, and N. Clegg
The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
Nucleic Acids Res. 30: 218-220
T. Honkura, J. Ogasawara, T. Yamada, and S. Morishita
The Gene Resource Locator: gene locus maps for transcriptome analysis
Nucleic Acids Res. 30: 221-225
C. Schšnbach, J.L.Y. Koh, D.R. Flower, L. Wong, and V. Brusic
FIMM, a database of functional molecular immunology: update 2002
Nucleic Acids Res. 30: 226-229
J.-M. Buerstedde, H. Arakawa, A. Watahiki, P.P. Carninci, Y.Y. Hayashizaki, B. Korn, and J. Plachy
The DT40 web site: sampling and connecting the genes of a B cell line
Nucleic Acids Res. 30: 230-231
J. VŠliaho, M. Pusa, T. Ylinen, and M. Vihinen
IDR: the ImmunoDeficiency Resource
Nucleic Acids Res. 30: 232-234
L. Falquet, M. Pagni, P. Bucher, N. Hulo, C.J.A. Sigrist, K. Hofmann, and A. Bairoch
The PROSITE database, its status in 2002
Nucleic Acids Res. 30: 235-238
T.K. Attwood, M.J. Blythe, D.R. Flower, A. Gaulton, J.E. Mabey, N. Maudling, L. McGregor, A.L. Mitchell, G. Moulton, K. Paine, and P. Scordis
and PRINTS-S shed light on protein ancestry
Nucleic Acids Res. 30: 239-241
I. Letunic, L. Goodstadt, N.J. Dickens, T. Doerks, J. Schultz, R. Mott, F. Ciccarelli, R.R. Copley, C.P. Ponting, and P. Bork
Recent improvements to the SMART domain-based sequence annotation resource
Nucleic Acids Res. 30: 242-244
J. Westbrook, Z. Feng, S. Jain, T.N. Bhat, N. Thanki, V. Ravichandran, G.L. Gilliland, W. Bluhm, H. Weissig, D.S. Greer, P.E. Bourne, and H.M. Berman
The Protein Data Bank: unifying the archive
Nucleic Acids Res. 30: 245-248
Y. Wang, J.B. Anderson, J. Chen, L.Y. Geer, S. He, D.I. Hurwitz, C.A. Liebert, T. Madej, G.H. Marchler, A. Marchler-Bauer, A.R. Panchenko, B.A. Shoemaker, J.S. Song, P.A. Thiessen, R.A. Yamashita, and S.H. Bryant
MMDB: EntrezŐs 3D-structure database
Nucleic Acids Res. 30: 249-252
J. Reichert and J. Sühnel
The IMB Jena Image Library of Biological Macromolecules: 2002 update
Nucleic Acids Res. 30: 253-254
U. Pieper, N. Eswar, A.C. Stuart, V.A. Ilyin, and A. Sali
MODBASE, a database of annotated comparative protein structure models
Nucleic Acids Res. 30: 255-259
J.-M. Chandonia, N.S. Walker, L. Lo Conte, P. Koehl, M. Levitt, and S.E. Brenner
ASTRAL compendium enhancements
Nucleic Acids Res. 30: 260-263
L. Lo Conte, S.E. Brenner, T.J.P. Hubbard, C. Chothia, and A.G. Murzin
SCOP database in 2002: refinements accommodate structural genomics
Nucleic Acids Res. 30: 264-267
J. Gough and C. Chothia
SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
Nucleic Acids Res. 30: 268-272
K. Vlahovicek, J. Murvai, E. Barta, and S. Pongor
The SBASE protein domain library, release 9.0: an online resource for protein domain identification
Nucleic Acids Res. 30: 273-275
A. Bateman, E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S.R. Eddy, S. Griffiths-Jones, K.L. Howe, M. Marshall, and E.L.L. Sonnhammer
The Pfam Protein Families Database
Nucleic Acids Res. 30: 276-280
A. Marchler-Bauer, A.R. Panchenko, B.A. Shoemaker, P.A. Thiessen, L.Y. Geer, and S.H. Bryant
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
Nucleic Acids Res. 30: 281-283
V. Mallika, A. Bhaduri, and R. Sowdhamini
PASS2: a semi-automated database of Protein Alignments Organised as Structural Superfamilies
Nucleic Acids Res. 30: 284-288
S.B. Pandit, D. Gosar, S. Abhiman, S. Sujatha, S.S. Dixit, N.S. Mhatre, R. Sowdhamini, and N. Srinivasan
SUPFAMŃa database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes
Nucleic Acids Res. 30: 289-293
T. Kawabata, S. Fukuchi, K. Homma, M. Ota, J. Araki, T. Ito, N. Ichiyoshi, and K. Nishikawa
GTOP: a database of protein structures predicted from genome sequences
Nucleic Acids Res. 30: 294-298
A. Krause, S.A. Haas, E. Coward, and M. Vingron
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein
Nucleic Acids Res. 30: 299-300
M.M. Gromiha, H. Uedaira, J. An, S. Selvaraj, P. Prabakaran, and A. Sarai
ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0
Nucleic Acids Res. 30: 301-302
I. Xenarios, L. Salw’nski, X.J. Duan, P. Higney, S.-M. Kim, and D. Eisenberg
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
Nucleic Acids Res. 30: 303-305
J.C. Mellor, I. Yanai, K.H. Clodfelter, J. Mintseris, and C. DeLisi
Predictome: a database of putative functional links between proteins
Nucleic Acids Res. 30: 306-309
G.H. Jacobs, O. Rackham, P.A. Stockwell, W. Tate, and C.M. Brown
Transterm: a database of mRNAs and translational control elements
Nucleic Acids Res. 30: 310-311
N.A. Kolchanov, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, I.L. Stepanenko, T.I. Merkulova, M.A. Pozdnyakov, N.L. Podkolodny, A.N. Naumochkin, and A.G. Romashchenko
Transcription Regulatory Regions Database (TRRD): its status in 2002
Nucleic Acids Res. 30: 312-317
R. Tobes and J.L. Ramos
AraC-XylS database: a family of positive transcriptional regulators in bacteria
Nucleic Acids Res. 30: 318-321
V. Praz, R. PŽrier, C. Bonnard, and P. Bucher
The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data
Nucleic Acids Res. 30: 322-324
M. Lescot, P. DŽhais, G. Thijs, K. Marchal, Y. Moreau, Y. Van de Peer, P. RouzŽ, and S. Rombauts
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
Nucleic Acids Res. 30: 325-327
Y. Suzuki, R. Yamashita, K. Nakai, and S. Sugano
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs
Nucleic Acids Res. 30: 328-331
O.V. Kel-Margoulis, A.E. Kel, I. Reuter, I.V. Deineko, and E. Wingender
TRANSCompel^¨: a database on composite regulatory elements in eukaryotic genes
Nucleic Acids Res. 30: 332-334
G. Pesole, S. Liuni, G. Grillo, F. Licciulli, F. Mignone, C. Gissi, and C. Saccone
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. UpdateĘ2002
Nucleic Acids Res. 30: 335-340
S. Sullivan, D.W. Sink, K.L. Trout, I. Makalowska, P.M. Taylor, A.D. Baxevanis, and D. Landsman
The Histone Database
Nucleic Acids Res. 30: 341-342
N.D. Rawlings, E. OŐBrien, and A.J. Barrett
MEROPS: the protease database
Nucleic Acids Res. 30: 343-346
F. De Leo, M. Volpicella, F. Licciulli, S. Liuni, R. Gallerani, and L.R. Ceci
PLANT-PIs: a database for plant protease inhibitors and their genes
Nucleic Acids Res. 30: 347-348
N. Maltsev, E. Marland, G.X. Yu, S. Bhatnagar, and R. Lusk
Sentra, a database of signal transduction proteins
Nucleic Acids Res. 30: 349-350
A.V. Spirov, M. Borovsky, and O.A. Spirova
HOX Pro DB: the functional genomics of hox ensembles
Nucleic Acids Res. 30: 351-353
C. Crasto, L. Marenco, P. Miller, and G. Shepherd
Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences
Nucleic Acids Res. 30: 354-360
Ż. Edvardsen, A.L. Reiersen, M.W. Beukers, and K. Kristiansen
tGRAP, the G-protein coupled receptors mutant database
Nucleic Acids Res. 30: 361-363
J. Duarte, G. PerriŹre, V. Laudet, and M. Robinson-Rechavi
NUREBASE: database of nuclear hormone receptors
Nucleic Acids Res. 30: 364-368
T.-K. Sohn, E.-J. Moon, S.-K. Lee, H.-G. Cho, and K.-W. Kim
AngioDB: database of angiogenesis and angiogenesis-related molecules
Nucleic Acids Res. 30: 369-371
I. Liebich, J. Bode, M. Frisch, and E. Wingender
S/MARt DB: a database on scaffold/matrix attached regions
Nucleic Acids Res. 30: 372-374
M.H.W. Weber, I. Fricke, N. Doll, and M.A. Marahiel
CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response
Nucleic Acids Res. 30: 375-378
J.M. Castagnetto, S.W. Hennessy, V.A. Roberts, E.D. Getzoff, J.A. Tainer, and M.E. Pique
MDB: the Metalloprotein Database and Browser at TheĘScripps Research Institute
Nucleic Acids Res. 30: 379-382
F.B. Perler
InBase: the Intein Database
Nucleic Acids Res. 30: 383-384
F. Li and D.L. Herrin
FUGOID: functional genomics of organellar introns database
Nucleic Acids Res. 30: 385-386
D. Fredman, M. Siegfried, Y.P. Yuan, P. Bork, H. LehvŠslaiho, and A.J. Brookes
HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources
Nucleic Acids Res. 30: 387-391
P.S. Klosterman, M. Tamura, S.R. Holbrook, and S.E. Brenner
SCOR: a Structural Classification of RNA database
Nucleic Acids Res. 30: 392-394
U. Nagaswamy, M. Larios-Sanz, J. Hury, S. Collins, Z. Zhang, Q. Zhao, and G.E. Fox
NCIR: a database of non-canonical interactions in known RNA structures
Nucleic Acids Res. 30: 395-397
E.A. Ananko, N.L. Podkolodny, I.L. Stepanenko, E.V. Ignatieva, O.A. Podkolodnaya, and N.A. Kolchanov
GeneNet: a database on structure and functional organisation of gene networks
Nucleic Acids Res. 30: 398-401
S. Goto, Y. Okuno, M. Hattori, T. Nishioka, and M. Kanehisa
LIGAND: database of chemical compounds and reactions in biological pathways
Nucleic Acids Res. 30: 402-404
A. Lo§, P. Bunsmann, A. Bohne, A. Lo§, E. Schwarzer, E. Lang, and C.-W. von der Lieth
SWEET-DB: an attempt to create annotated data collections for carbohydrates
Nucleic Acids Res. 30: 405-408
W.W. Li, B.V.B. Reddy, J.G. Tate, I.N. Shindyalov, and P.E. Bourne
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase
Nucleic Acids Res. 30: 409-411
X. Chen, Z.L. Ji, and Y.Z. Chen
TTD: Therapeutic Target Database
Nucleic Acids Res. 30: 412-415
D. Harmsen, J. RothgŠnger, M. Frosch, and J. Albert
RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database
Nucleic Acids Res. 30: 416-417

>Latest update: March 22, 2002

Ralf Koebnik
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