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Sequence comparisons

Homology searches

Motif searches

Hidden Markov models

Hydrophobicity analyses

Topology and helix packing

Protein localization

Secondary structure

Super-secondary structure

3D structure


    Databases in Molecular Biology (2002):

    An overview about molecular biological databases is given each year in the January issue of Nucleic Acids Research. The published articles are very useful to get fast and qualified answers to related questions. Please enjoy the list of articles published in January 2002:

  • A.D. Baxevanis
    The Molecular Biology Database Collection: 2002 update
    Nucleic Acids Res. 30: 1-12

  • D.L. Wheeler, D.M. Church, A.E. Lash, D.D. Leipe, T.L. Madden, J.U. Pontius, G.D. Schuler, L.M. Schriml, T.A. Tatusova, L. Wagner, and B.A. Rapp
    Database resources of the National Center for Biotechnology Information: 2002 update
    Nucleic Acids Res. 30: 13-16

  • D.A. Benson, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, B.A. Rapp, and D.L. Wheeler
    Nucleic Acids Res. 30: 17-20

  • G. Stoesser, W. Baker, A. van den Broek, E. Camon, M. Garcia-Pastor, C. Kanz, T. Kulikova, R. Leinonen, Q. Lin, V. Lombard, R. Lopez, N. Redaschi, P. Stoehr, M.A. Tuli, K. Tzouvara, and R. Vaughan
    The EMBL Nucleotide Sequence Database
    Nucleic Acids Res. 30: 21-26

  • Y. Tateno, T. Imanishi, S. Miyazaki, K. Fukami-Kobayashi, N. Saitou, H. Sugawara, and T. Gojobori
    DNA Data Bank of Japan (DDBJ) for genome scale research in life science
    Nucleic Acids Res. 30: 27-30

  • H.W. Mewes, D. Frishman, U. Gźldener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Mźnsterkštter, S. Rudd, and B. Weil
    MIPS: a database for genomes and protein sequences
    Nucleic Acids Res. 30: 31-34

  • C.H. Wu, H. Huang, L. Arminski, J. Castro-Alvear, Y. Chen, Z.-Z. Hu, R.S. Ledley, K.C. Lewis, H.-W. Mewes, B.C. Orcutt, B.E. Suzek, A. Tsugita, C.R. Vinayaka, L.-S.L. Yeh, J. Zhang, and W.C. Barker
    The Protein Information Resource: an integrated public resource of functional annotation of proteins
    Nucleic Acids Res. 30: 35-37

  • T. Hubbard, D. Barker, E. Birney, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, and M. Clamp
    The Ensembl genome database project
    Nucleic Acids Res. 30: 38-41

  • M. Kanehisa, S. Goto, S. Kawashima, and A. Nakaya
    The KEGG databases at GenomeNet
    Nucleic Acids Res. 30: 42-46

  • I. Schomburg, A. Chang, and D. Schomburg
    BRENDA, enzyme data and metabolic information
    Nucleic Acids Res. 30: 47-49

  • B.M. Ursing, F.H.J. van Enckevort, J.A.M. Leunissen, and R.J. Siezen
    EXProt: a database for proteins with an experimentally verified function
    Nucleic Acids Res. 30: 50-51

  • A. Hamosh, A.F. Scott, J. Amberger, C. Bocchini, D. Valle, and V.A. McKusick
    Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    Nucleic Acids Res. 30: 52-55

  • P.D. Karp, M. Riley, M. Saier, I.T. Paulsen, J. Collado-Vides, S.M. Paley, A. Pellegrini-Toole, C. Bonavides, and S. Gama-Castro
    The EcoCyc Database
    Nucleic Acids Res. 30: 56-58

  • P.D. Karp, M. Riley, S.M. Paley, and A. Pellegrini-Toole
    The MetaCyc Database
    Nucleic Acids Res. 30: 59-61

  • I. Moszer, L.M. Jones, S. Moreira, C. Fabry, and A. Danchin
    SubtiList: the reference database for the Bacillus subtilis genome
    Nucleic Acids Res. 30: 62-65

  • M. Fumoto, S. Miyazaki, and H. Sugawara
    Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more
    Nucleic Acids Res. 30: 66-68

  • S.S. Dwight, M.A. Harris, K. Dolinski, C.A. Ball, Gail Binkley, K.R. Christie, D.G. Fisk, L. Issel-Tarver, M. Schroeder, G. Sherlock, A. Sethuraman, S. Weng, D. Botstein, and J.M. Cherry
    Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
    Nucleic Acids Res. 30: 69-72

  • A. Kumar, K.-H. Cheung, N. Tosches, P. Masiar, Y. Liu, P. Miller, and M. Snyder
    The TRIPLES database: a community resource for yeast molecular biology
    Nucleic Acids Res. 30: 73-75

  • S. Le Crom, F. Devaux, C. Jacq, and P. Marc
    yMGV: helping biologists with yeast microarray data mining
    Nucleic Acids Res. 30: 76-79

  • G. Habeler, K. Natter, G.G. Thallinger, M.E. Crawford, S.D. Kohlwein, and Z. Trajanoski
    YPL.db: the Yeast Protein Localization database
    Nucleic Acids Res. 30: 80-83

  • L. Kreppel and A.R. Kimmel
    Genomic database resources for Dictyostelium discoideum
    Nucleic Acids Res. 30: 84-86

  • A. Bahl, B. Brunk, R.L. Coppel, J. Crabtree, S.J. Diskin, M.J. Fraunholz, G.R. Grant, D. Gupta, R.L. Huestis, J.C. Kissinger, P. Labo, L. Li, S.K. McWeeney, A.J. Milgram, D.S. Roos, J. Schug, and C.J. Stoeckert Jr
    PlasmoDB: the Plasmodium genome resource. AnĘintegrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished)
    Nucleic Acids Res. 30: 87-90

  • H. Schoof, P. Zaccaria, H. Gundlach, K. Lemcke, S. Rudd, G. Kolesov, R. Arnold, H.W. Mewes, and K.F.X. Mayer
    MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome
    Nucleic Acids Res. 30: 91-93

  • F. Samson, V. Brunaud, S. Balzergue, B. Dubreucq, L. Lepiniec, G. Pelletier, M. Caboche, and A. Lecharny
    FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants
    Nucleic Acids Res. 30: 94-97

  • K. Sakata, Y. Nagamura, H. Numa, B.A. Antonio, H. Nagasaki, A. Idonuma, W. Watanabe, Y. Shimizu, I. Horiuchi, T. Matsumoto, T. Sasaki, and K. Higo
    RiceGAAS: an automated annotation system and database for rice genome sequence
    Nucleic Acids Res. 30: 98-102

  • D. Ware, P. Jaiswal, J. Ni, X. Pan, K. Chang, K. Clark, L. Teytelman, S. Schmidt, W. Zhao, S. Cartinhour, S. McCouch, and L. Stein
    Gramene: a resource for comparative grass genomics
    Nucleic Acids Res. 30: 103-105

  • The FlyBase Consortium
    The FlyBase database of the Drosophila genome projects and community literature
    Nucleic Acids Res. 30: 106-108

  • Y. Van de Peer, J.S. Taylor, J. Joseph, and A. Meyer
    Wanda: a database of duplicated fish genes
    Nucleic Acids Res. 30: 109-112

  • J.A. Blake, J.E. Richardson, C.J. Bult, J.A. Kadin, J.T. Eppig, and The Mouse Genome Database Group
    The Mouse Genome Database (MGD): the model organism database for the laboratory mouse
    Nucleic Acids Res. 30: 113-115

  • H. Bono, T. Kasukawa, M. Furuno, Y. Hayashizaki, and Y. Okazaki
    FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones
    Nucleic Acids Res. 30: 116-118

  • T. Kawashima, S. Kawashima, Y. Kohara, M. Kanehisa, and K.W. Makabe
    Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags
    Nucleic Acids Res. 30: 119-120

  • S.L. Martin, B.P. Blackmon, R. Rajagopalan, T.D. Houfek, R.G. Sceeles, S.O. Denn, T.K. Mitchell, D.E. Brown, R.A. Wing, and R.A. Dean
    MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea
    Nucleic Acids Res. 30: 121-124

  • S. Twigger, J. Lu, M. Shimoyama, D. Chen, D. Pasko, H. Long, J. Ginster, C.-F. Chen, R. Nigam, A. Kwitek, J. Eppig, L. Maltais, D. Maglott, G. Schuler, H. Jacob, and P.J. Tonellato
    Rat Genome Database (RGD): mapping disease onto the genome
    Nucleic Acids Res. 30: 125-128

  • A. Kerlavage, V. Bonazzi, M. di Tommaso, C. Lawrence, P. Li, F. Mayberry, R. Mural, M. Nodell, M. Yandell, J. Zhang, and P. Thomas
    The Celera Discovery SystemTM
    Nucleic Acids Res. 30: 129-136

  • P.E. Hodges, P.M. Carrico, J.D. Hogan, K.E. OŐNeill, J.J. Owen, M. Mangan, B.P. Davis, J.E. Brooks, and J.I. Garrels
    Annotating the human proteome: the Human Proteome Survey Database (HumanPSDTM) and an in-depth target database for G protein-coupled receptors (GPCR-PDTM) from Incyte Genomics
    Nucleic Acids Res. 30: 137-141

  • C.-A.H. Roten, P. Gamba, J.-L. Barblan, and D. Karamata
    Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes
    Nucleic Acids Res. 30: 142-144

  • D.G. Gilbert
    euGenes: a eukaryote genome information system
    Nucleic Acids Res. 30: 145-148

  • S. Chien, L.T. Reiter, E. Bier, and M. Gribskov
    Homophila: human disease gene cognates in Drosophila
    Nucleic Acids Res. 30: 149-151

  • M. Hirakawa
    HOWDY: an integrated database system for human genome research
    Nucleic Acids Res. 30: 152-157

  • M. Hirakawa, T. Tanaka, Y. Hashimoto, M. Kuroda, T. Takagi, and Y. Nakamura
    JSNP: a database of common gene variations in the Japanese population
    Nucleic Acids Res. 30: 158-162

  • M. Hewett, D.E. Oliver, D.L. Rubin, K.L. Easton, J.M. Stuart, R.B. Altman, and T.E. Klein
    PharmGKB: the Pharmacogenetics Knowledge Base
    Nucleic Acids Res. 30: 163-165

  • R. Kikuno, T. Nagase, M. Waki, and O. Ohara
    HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project
    Nucleic Acids Res. 30: 166-168

  • H.M. Wain, M. Lush, F. Ducluzeau, and S. Povey
    Genew: the Human Gene Nomenclature Database
    Nucleic Acids Res. 30: 169-171

  • M. Attimonelli, D. Catalano, C. Gissi, G. Grillo, F. Licciulli, S. Liuni, M. Santamaria, G. Pesole, and C. Saccone
    MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002
    Nucleic Acids Res. 30: 172-173

  • C. Lanave, F. Licciulli, M. De Robertis, A. Marolla, and M. Attimonelli
    Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
    Nucleic Acids Res. 30: 174-175

  • M. Szymanski, M.Z. Barciszewska, V.A. Erdmann, and J. Barciszewski
    5S Ribosomal RNA Database
    Nucleic Acids Res. 30: 176-178

  • K.P. Williams
    The tmRNA Website: invasion by an intron
    Nucleic Acids Res. 30: 179-182

  • J. Wuyts, Y. Van de Peer, T. Winkelmans, and R. De Wachter
    The European database on small subunit ribosomal RNA
    Nucleic Acids Res. 30: 183-185

  • Y.-H. Huang, Y.-T. Chen, J.-J. Lai, S.-T. Yang, and U.-C. Yang
    PALS db: Putative Alternative Splicing database
    Nucleic Acids Res. 30: 186-190

  • M. Sakharkar, F. Passetti, J.E. de Souza, M. Long, and S.J. de Souza
    ExInt: an Exon Intron Database
    Nucleic Acids Res. 30: 191-194

  • J.V. Ponomarenko, G.V. Orlova, A.S. Frolov, M.S. Gelfand, and M.P. Ponomarenko
    SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
    Nucleic Acids Res. 30: 195-199

  • V.P. Valuev, D.A. Afonnikov, M.P. Ponomarenko, L. Milanesi, and N.A. Kolchanov
    ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
    Nucleic Acids Res. 30: 200-202

  • K. Onodera and U. Melcher
    VirOligo: a database of virus-specific oligonucleotides
    Nucleic Acids Res. 30: 203-204

  • J. Paces, A. Pavl’cek, and V. Paces
    HERVd: database of human endogenous retroviruses
    Nucleic Acids Res. 30: 205-206

  • R. Edgar, M. Domrachev, and A.E. Lash
    Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    Nucleic Acids Res. 30: 207-210

  • H. Bono, T. Kasukawa, Y. Hayashizaki, and Y. Okazaki
    READ: RIKEN Expression Array Database
    Nucleic Acids Res. 30: 211-213

  • P.M. Haverty, Z. Weng, N.L. Best, K.R. Auerbach, L.-L. Hsiao, R.V. Jensen, and S.R. Gullans
    HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues
    Nucleic Acids Res. 30: 214-217

  • P.S. Nelson, C. Pritchard, D. Abbott, and N. Clegg
    The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
    Nucleic Acids Res. 30: 218-220

  • T. Honkura, J. Ogasawara, T. Yamada, and S. Morishita
    The Gene Resource Locator: gene locus maps for transcriptome analysis
    Nucleic Acids Res. 30: 221-225

  • C. Schšnbach, J.L.Y. Koh, D.R. Flower, L. Wong, and V. Brusic
    FIMM, a database of functional molecular immunology: update 2002
    Nucleic Acids Res. 30: 226-229

  • J.-M. Buerstedde, H. Arakawa, A. Watahiki, P.P. Carninci, Y.Y. Hayashizaki, B. Korn, and J. Plachy
    The DT40 web site: sampling and connecting the genes of a B cell line
    Nucleic Acids Res. 30: 230-231

  • J. VŠliaho, M. Pusa, T. Ylinen, and M. Vihinen
    IDR: the ImmunoDeficiency Resource
    Nucleic Acids Res. 30: 232-234

  • L. Falquet, M. Pagni, P. Bucher, N. Hulo, C.J.A. Sigrist, K. Hofmann, and A. Bairoch
    The PROSITE database, its status in 2002
    Nucleic Acids Res. 30: 235-238

  • T.K. Attwood, M.J. Blythe, D.R. Flower, A. Gaulton, J.E. Mabey, N. Maudling, L. McGregor, A.L. Mitchell, G. Moulton, K. Paine, and P. Scordis
    and PRINTS-S shed light on protein ancestry
    Nucleic Acids Res. 30: 239-241

  • I. Letunic, L. Goodstadt, N.J. Dickens, T. Doerks, J. Schultz, R. Mott, F. Ciccarelli, R.R. Copley, C.P. Ponting, and P. Bork
    Recent improvements to the
    SMART domain-based sequence annotation resource
    Nucleic Acids Res. 30: 242-244

  • J. Westbrook, Z. Feng, S. Jain, T.N. Bhat, N. Thanki, V. Ravichandran, G.L. Gilliland, W. Bluhm, H. Weissig, D.S. Greer, P.E. Bourne, and H.M. Berman
    The Protein Data Bank: unifying the archive
    Nucleic Acids Res. 30: 245-248

  • Y. Wang, J.B. Anderson, J. Chen, L.Y. Geer, S. He, D.I. Hurwitz, C.A. Liebert, T. Madej, G.H. Marchler, A. Marchler-Bauer, A.R. Panchenko, B.A. Shoemaker, J.S. Song, P.A. Thiessen, R.A. Yamashita, and S.H. Bryant
    MMDB: EntrezŐs 3D-structure database
    Nucleic Acids Res. 30: 249-252

  • J. Reichert and J. Sühnel
    The IMB Jena Image Library of Biological Macromolecules: 2002 update
    Nucleic Acids Res. 30: 253-254

  • U. Pieper, N. Eswar, A.C. Stuart, V.A. Ilyin, and A. Sali
    MODBASE, a database of annotated comparative protein structure models
    Nucleic Acids Res. 30: 255-259

  • J.-M. Chandonia, N.S. Walker, L. Lo Conte, P. Koehl, M. Levitt, and S.E. Brenner
    ASTRAL compendium enhancements
    Nucleic Acids Res. 30: 260-263

  • L. Lo Conte, S.E. Brenner, T.J.P. Hubbard, C. Chothia, and A.G. Murzin
    SCOP database in 2002: refinements accommodate structural genomics
    Nucleic Acids Res. 30: 264-267

  • J. Gough and C. Chothia
    SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
    Nucleic Acids Res. 30: 268-272

  • K. Vlahovicek, J. Murvai, E. Barta, and S. Pongor
    The SBASE protein domain library, release 9.0: an online resource for protein domain identification
    Nucleic Acids Res. 30: 273-275

  • A. Bateman, E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S.R. Eddy, S. Griffiths-Jones, K.L. Howe, M. Marshall, and E.L.L. Sonnhammer
    The Pfam Protein Families Database
    Nucleic Acids Res. 30: 276-280

  • A. Marchler-Bauer, A.R. Panchenko, B.A. Shoemaker, P.A. Thiessen, L.Y. Geer, and S.H. Bryant
    CDD: a database of conserved domain alignments with links to domain three-dimensional structure
    Nucleic Acids Res. 30: 281-283

  • V. Mallika, A. Bhaduri, and R. Sowdhamini
    PASS2: a semi-automated database of Protein Alignments Organised as Structural Superfamilies
    Nucleic Acids Res. 30: 284-288

  • S.B. Pandit, D. Gosar, S. Abhiman, S. Sujatha, S.S. Dixit, N.S. Mhatre, R. Sowdhamini, and N. Srinivasan
    SUPFAMŃa database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes
    Nucleic Acids Res. 30: 289-293

  • T. Kawabata, S. Fukuchi, K. Homma, M. Ota, J. Araki, T. Ito, N. Ichiyoshi, and K. Nishikawa
    GTOP: a database of protein structures predicted from genome sequences
    Nucleic Acids Res. 30: 294-298

  • A. Krause, S.A. Haas, E. Coward, and M. Vingron
    SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein
    Nucleic Acids Res. 30: 299-300

  • M.M. Gromiha, H. Uedaira, J. An, S. Selvaraj, P. Prabakaran, and A. Sarai
    ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0
    Nucleic Acids Res. 30: 301-302

  • I. Xenarios, L. Salw’nski, X.J. Duan, P. Higney, S.-M. Kim, and D. Eisenberg
    DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
    Nucleic Acids Res. 30: 303-305

  • J.C. Mellor, I. Yanai, K.H. Clodfelter, J. Mintseris, and C. DeLisi
    Predictome: a database of putative functional links between proteins
    Nucleic Acids Res. 30: 306-309

  • G.H. Jacobs, O. Rackham, P.A. Stockwell, W. Tate, and C.M. Brown
    Transterm: a database of mRNAs and translational control elements
    Nucleic Acids Res. 30: 310-311

  • N.A. Kolchanov, E.V. Ignatieva, E.A. Ananko, O.A. Podkolodnaya, I.L. Stepanenko, T.I. Merkulova, M.A. Pozdnyakov, N.L. Podkolodny, A.N. Naumochkin, and A.G. Romashchenko
    Transcription Regulatory Regions Database (TRRD): its status in 2002
    Nucleic Acids Res. 30: 312-317

  • R. Tobes and J.L. Ramos
    AraC-XylS database: a family of positive transcriptional regulators in bacteria
    Nucleic Acids Res. 30: 318-321

  • V. Praz, R. PŽrier, C. Bonnard, and P. Bucher
    The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data
    Nucleic Acids Res. 30: 322-324

  • M. Lescot, P. DŽhais, G. Thijs, K. Marchal, Y. Moreau, Y. Van de Peer, P. RouzŽ, and S. Rombauts
    PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
    Nucleic Acids Res. 30: 325-327

  • Y. Suzuki, R. Yamashita, K. Nakai, and S. Sugano
    DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs
    Nucleic Acids Res. 30: 328-331

  • O.V. Kel-Margoulis, A.E. Kel, I. Reuter, I.V. Deineko, and E. Wingender
    TRANSCompel¨: a database on composite regulatory elements in eukaryotic genes
    Nucleic Acids Res. 30: 332-334

  • G. Pesole, S. Liuni, G. Grillo, F. Licciulli, F. Mignone, C. Gissi, and C. Saccone
    UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. UpdateĘ2002
    Nucleic Acids Res. 30: 335-340

  • S. Sullivan, D.W. Sink, K.L. Trout, I. Makalowska, P.M. Taylor, A.D. Baxevanis, and D. Landsman
    The Histone Database
    Nucleic Acids Res. 30: 341-342

  • N.D. Rawlings, E. OŐBrien, and A.J. Barrett
    MEROPS: the protease database
    Nucleic Acids Res. 30: 343-346

  • F. De Leo, M. Volpicella, F. Licciulli, S. Liuni, R. Gallerani, and L.R. Ceci
    PLANT-PIs: a database for plant protease inhibitors and their genes
    Nucleic Acids Res. 30: 347-348

  • N. Maltsev, E. Marland, G.X. Yu, S. Bhatnagar, and R. Lusk
    Sentra, a database of signal transduction proteins
    Nucleic Acids Res. 30: 349-350

  • A.V. Spirov, M. Borovsky, and O.A. Spirova
    HOX Pro DB: the functional genomics of hox ensembles
    Nucleic Acids Res. 30: 351-353

  • C. Crasto, L. Marenco, P. Miller, and G. Shepherd
    Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences
    Nucleic Acids Res. 30: 354-360

  • Ż. Edvardsen, A.L. Reiersen, M.W. Beukers, and K. Kristiansen
    tGRAP, the G-protein coupled receptors mutant database
    Nucleic Acids Res. 30: 361-363

  • J. Duarte, G. PerriŹre, V. Laudet, and M. Robinson-Rechavi
    NUREBASE: database of nuclear hormone receptors
    Nucleic Acids Res. 30: 364-368

  • T.-K. Sohn, E.-J. Moon, S.-K. Lee, H.-G. Cho, and K.-W. Kim
    AngioDB: database of angiogenesis and angiogenesis-related molecules
    Nucleic Acids Res. 30: 369-371

  • I. Liebich, J. Bode, M. Frisch, and E. Wingender
    S/MARt DB: a database on scaffold/matrix attached regions
    Nucleic Acids Res. 30: 372-374

  • M.H.W. Weber, I. Fricke, N. Doll, and M.A. Marahiel
    CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response
    Nucleic Acids Res. 30: 375-378

  • J.M. Castagnetto, S.W. Hennessy, V.A. Roberts, E.D. Getzoff, J.A. Tainer, and M.E. Pique
    MDB: the Metalloprotein Database and Browser at TheĘScripps Research Institute
    Nucleic Acids Res. 30: 379-382

  • F.B. Perler
    InBase: the Intein Database
    Nucleic Acids Res. 30: 383-384

  • F. Li and D.L. Herrin
    FUGOID: functional genomics of organellar introns database
    Nucleic Acids Res. 30: 385-386

  • D. Fredman, M. Siegfried, Y.P. Yuan, P. Bork, H. LehvŠslaiho, and A.J. Brookes
    HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources
    Nucleic Acids Res. 30: 387-391

  • P.S. Klosterman, M. Tamura, S.R. Holbrook, and S.E. Brenner
    SCOR: a Structural Classification of RNA database
    Nucleic Acids Res. 30: 392-394

  • U. Nagaswamy, M. Larios-Sanz, J. Hury, S. Collins, Z. Zhang, Q. Zhao, and G.E. Fox
    NCIR: a database of non-canonical interactions in known RNA structures
    Nucleic Acids Res. 30: 395-397

  • E.A. Ananko, N.L. Podkolodny, I.L. Stepanenko, E.V. Ignatieva, O.A. Podkolodnaya, and N.A. Kolchanov
    GeneNet: a database on structure and functional organisation of gene networks
    Nucleic Acids Res. 30: 398-401

  • S. Goto, Y. Okuno, M. Hattori, T. Nishioka, and M. Kanehisa
    LIGAND: database of chemical compounds and reactions in biological pathways
    Nucleic Acids Res. 30: 402-404

  • A. Lo§, P. Bunsmann, A. Bohne, A. Lo§, E. Schwarzer, E. Lang, and C.-W. von der Lieth
    SWEET-DB: an attempt to create annotated data collections for carbohydrates
    Nucleic Acids Res. 30: 405-408

  • W.W. Li, B.V.B. Reddy, J.G. Tate, I.N. Shindyalov, and P.E. Bourne
    CKAAPs DB: a Conserved Key Amino Acid Positions DataBase
    Nucleic Acids Res. 30: 409-411

  • X. Chen, Z.L. Ji, and Y.Z. Chen
    TTD: Therapeutic Target Database
    Nucleic Acids Res. 30: 412-415

  • D. Harmsen, J. RothgŠnger, M. Frosch, and J. Albert
    RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database
    Nucleic Acids Res. 30: 416-417


>Latest update: March 22, 2002

Ralf Koebnik
Institut de recherche pour le dèveloppement
911, Avenue Agropolis, BP 64501
34394 Montpellier, Cedex 5
Phone: +33 (0)4 67 41 62 28
Fax: +33 (0)4 67 41 61 81
Email: koebnik(at)
Please replace (at) by @.

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