References:
-
R. Apweiler, T.K. Attwood, A. Bairoch, A. Bateman, E. Birney, M. Biswas, P. Bucher, L. Cerutti, F. Corpet, M.D. Croning, R. Durbin, L. Falquet, W. Fleischmann, J. Gouzy, H. Hermjakob, N. Hulo, I. Jonassen, D. Kahn, A. Kanapin, Y. Karavidopoulou, R. Lopez, B. Marx, N.J. Mulder, T.M. Oinn, M. Pagni, and F. Servant (2001)
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
Nucleic Acids Res. 29: 37-40
Database with protein sequence motifs
-
T.K. Attwood, M.J. Blythe, D.R. Flower, A. Gaulton, J.E. Mabey, N. Maudling, L. McGregor, A.L. Mitchell, G. Moulton, K. Paine, and P. Scordis (2002)
PRINTS and PRINTS-S shed light on protein ancestry
Nucleic Acids Res. 30: 239-241
Database with protein sequence motifs
-
A.G. Bachinsky, A.S. Frolov, A.N. Naumochkin, L.Ph. Nizolenko, and A.A. Yarigin (2000)
PROF_ PAT 1.3: updated database of patterns used to detect local similarities
Bioinformatics 16: 358-366
Database with protein sequence motifs
-
Timothy L. Bailey and Michael Gribskov (1998)
Combining evidence using p-values: application to sequence homology searches
Bioinformatics 14: 48-54
Database homology search (MAST)
-
Timothy L. Bailey and Michael Gribskov (2000)
Concerning the accuracy of MAST E-values
Bioinformatics 16: 488-489
Database homology search (MAST)
-
Alex Bateman, Ewan Birney, Lorenzo Cerruti, Richard Durbin, Laurence Etwiller, Sean R. Eddy, Sam Griffith-Jones, Kevin L. Howe, Mhairi Marshall, and Erik L.L. Sonnhammer (2002)
The Pfam protein families database
Nucleic Acids Res. 30: 276-280
Database with protein sequence motifs
-
Florence Corpet, Florence Servant, Jérome Gouzy, and Daniel Kahn (2000)
ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
Nucleic Acids Res. 28: 267-269
Database with protein sequence motifs
-
Mark Dsouza, Niels Larsen, and Ross Overbeek (1997)
Searching for patterns in genomic data
Trends Genet. 13: 497-495
Database homology search (PatScan)
-
Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J.A. Sigrist, Kay Hofmann, and Amos Bairoch (2002)
The PROSITE database, its status in 2002
Nucleic Acids Res. 27: 235-238
Database with protein sequence motifs
-
Jérome Gracy and Patrick Argos (1998)
DOMO: a new database of aligned protein domains
Trends Biochem. Sci. 23: 495-497
Database with protein sequence motifs
-
Steven Henikoff, Jorja G. Henikoff, and Shmuel Pietrokovski (1999)
Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations
Bioinformatics 15: 471-479
Database with protein sequence motifs
-
Jorja G. Henikoff, Elisabeth A. Greene, Shmuel Pietrokovski, and Steven Henikoff (2000)
Increased coverage of protein families with the blocks database servers
Nucleic Acids Res. 28: 228-230
Database with protein sequence motifs
-
Uwe Hobohm, Tony Houthaeve, and Chris Sander (1994)
Amino acid analysis and protein database compositional search as a rapid and inexpensive method to identify proteins
Anal. Biochem. 222: 202-209
Database homology search
-
Uwe Hobohm and Chris Sander (1995)
A sequence property approach to searching protein databases
J. Mol. Biol. 251: 390-399
Database homology search (PropSearch)
-
Jimmy Y. Huang and DouglasL. Brutlag (2001)
The eMOTIF database
Nucleic Acids Res. 29: 202-204
Database with protein sequence motifs
-
A. Krause, J. Stoye, and M. Vingron (2000)
The SYSTERS protein sequence cluster set
Nucleic Acids Res. 28: 270-272
Database with protein sequence motifs
-
Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens, Tobias Doerks, Joerg Schultz, Francesca Ciccarelli, Richard R. Copley, Chris P. Ponting, and Peer Bork(2002)
Recent improvements to the SMART domain-based sequence annotation resource
Nucl. Acids Res. 30: 242-244
Database with protein sequence motifs
-
Shmuel Pietrokovski (1996)
Searching databases of conserved sequence regions by aligning protein multiple-alignments
Nucleic Acids Res. 24: 3836-3845
Database homology search (LAMA)
-
Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, and Stephen F. Altschul (1999)
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
Bioinformatics 15: 1000-1011
Database homology search (IMPALA)
-
Philip Scordis, Darren R. Flower, and Teresa K. Attwood (1999)
FingerPRINTScan: intelligent searching of the PRINTS motif database.
Bioinformatics 15: 799-806
Database homology search
-
Kevin A.T. Silverstein, Elizabeth Shoop, James E. Johnson, and Ernest F. Retzel (2001)
MetaFam: a unified classification of protein families. I. Overview and statistics
Bioinformatics 17: 249-261
Database with protein sequence motifs
-
Kristian Vlahovicek, János Murvai, Endre Barta, and Sándor Pongor (2002)
The SBASE protein domain library, release 9.0: an online resource for protein domain identification
Nucleic Acids Res. 30: 273-275
Database with protein sequence motifs
-
Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, Hongzhan Huang, and Winona C. Barker (2001)
iProClass: an integrated, comprehensive and annotated protein classification database
Nucleic Acids Res. 29: 52-54
Database with protein sequence motifs
Latest update of content: September 20, 2005
Ralf Koebnik
Institut de recherche pour le dèveloppement
UMR 5096, CNRS-UP-IRD
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