Given are several amino acid sequences. Find all homologous proteins in the database. If a conventional BLAST search doesn't find homologous proteins, try other search algorithms. Which ones do you consider? Hrp proteins Protein 1 (HrpB1 from Xanthomonas campestris pv. vesicatoria):
1 mektqcpgsv vsglielitv glthekiqda aavlaavrvl rpelkaldtf dawisikrgn
61 yvegarllre lesdagskpl cralyacclf amgdpswhgv adglieedad adavalvkal
121 sgrstptsap aevpvessap mevpnsqylr a
Protein 2 (HrpB2 from Xanthomonas campestris pv. vesicatoria):
1 mtlippvqai agtsaaatqa lspvatpnqa lvnrfqalmq sssplppamq rvgnpsmmsr
61 vvdvqndglr tiaehidafs mqaptmglqe maaqqiklmh eltmvgfnln vsvgvaqsgk
121 navqtlvknq
Protein 3 (HrpB4 from Xanthomonas campestris pv. vesicatoria):
1 mdntridnaa rcvqrwtdal aqlaesldaa rvahwlgpva asgwaaapvh rrmrviqaws
61 gwselspsal glhanqlall mparlakvli aralfsrgla vrrciererl dwleqcvgpa
121 vlehvrqnas aglpvpllpr dadqaawvgd gwrrmqadgv wsnpvvakll alslplgaaq
181 vatvaadgas dafltalptl ipeascvcg
Protein 4 (HrpB7 from Xanthomonas campestris pv. vesicatoria):
1 mrepaytwsv lhqlkarrce rmqerlsdcr ralehcdrel arcrqeaeac ttrlancdaa
61 lmdktgvggs ididtilqhe rfrtvlvetc raaeqaraaa dqslhsarde lasvqqalsk
121 lqaqaqvyad kaasarrarq aqrdaaeeed aiealvglrs hraahggar
Protein 5 (HrpD5 from Xanthomonas campestris pv. vesicatoria):
1 mtmqlrvmtg thagarldla qgrytlgsdp qtdiriddwp gcsliievdq dgqirygsdt
61 vqetffvafq pvrfgplvlc vgdaaadwpd dvallerlls papppaprts rrkvlrtavg
121 avlalaaaal lpslqpafls daatrqhpen tlnqakallk qlgfreahae qvgtrvlieg
181 lvpssadaar lraqvhryhp gvavnvavvd evvatlrdtl adpaltvrye gngvfsvsgs
241 sdyaerasrr iadvrsdlgp evralhveis qqdpsikppd nydaalladg lhyvetpdgt
301 khmtslpqqa aq
Protein 6 (HrpD6 from Xanthomonas campestris pv. vesicatoria):
1 mrdhtmfdam tdavtqdmsk ilqakamdls gerlrnveta ldataqqirv hwsaasdqva
61 rndfnvlydg itaarnivah iasmp
Protein 7 (HrpE1 from Xanthomonas campestris pv. vesicatoria):
1 mqifpevssw rsrvgqgmdc ftgglsngis gaaalsgang qmdsllgdms asdeaqksmn
61 nkitmlkndl dfnvalnkfi gkagdnakql vgq
Protein 8 (HrpF from Xanthomonas campestris pv. vesicatoria):
1 mslntlstgs npsqllgtsf nessssellg sdsskdgsdl pstmdnifqr iylllealqa
61 ntpnsasgna pantasgdad tqlsasdwqa tqpiekrtsw pslgydfdpk hikgkdappa
121 legstvtwnd gtltkselqi vstlnahkdq mpleyknldd kindpstpad lkaalqglkq
181 dprlffaigs qgdgkcggki saqdlwdfsd shpqvkelgg kndefnpkni kgsnpppaae
241 gstvtwnegq lnqseleivs vldrhkdqvd slsfdqldak indpstqpdl kkalqglqkd
301 prlffaigsq kdgkcggkik aqdltdfsyy hpqiaeyndk qaksytqnyi asdspdktka
361 svmtksdalr elyrysdylp gnlsedefak ivdgdsktgk cppqviaaaq yfrdhpdewk
421 efagdsgsms tpdflqksts emhltadeqk tldtinshqd afygdgkeit rdkldaiskd
481 dkadpavkqa atqlladpll fgllnnsitg ykkphhffgg ghvvdsgkis qddfrqfydh
541 msaanktvdt patheasspd qqkavadmlv gkddppaikk pkkdvgtfqq glheflkwds
601 kildwmsvgl salngipiig eiadaasial eseaqaaqvv dtaiqggdms lalklaginm
661 agavvgavgg ptarigakgv akgvaeaaak eaaegaakga akgtaksvak gggktaaerp
721 saaefakgyv ggtaiskste ilktpvlagl hyeeyqldkq kdgeihqkme naggvpvgkq
781 iipkgiadnf egdlrqnlrn vrirrr
Latest update: October 15, 2009 Ralf Koebnik
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