Given are several amino acid sequences. Find all homologous proteins in the database. If a conventional BLAST search doesn't find homologous proteins, try other search algorithms. Which ones do you consider? Hpa proteins Protein 1 (HpaA from Xanthomonas campestris pv. vesicatoria):
1 mirrispgtl rpsvsiehgg shhhgdhhad asgtsagspt diaaraprlr papprrrrrg
61 irsldgqede fdaneqeeie akrecalrgr vsvaitpaqs rehgqgdqhg gdrsthtddp
121 qagpwhsaap aqlsdsirtc idaivdryvt rrdadpvakr halaaalvel ravgvshpav
181 apltatiwrl mrehlraydk ataaenllal rtrllelmps elepvpalrn fhlllplill
241 naekprrrvd rthaitrlnt llieqpqqaa qevrp
Protein 2 (HpaB from Xanthomonas campestris pv. vesicatoria):
1 mhvspqmssa rfetivrqmc ealdlpdves vldrrvlwve gfevylhlpt pqpeddvkee
61 alylriaygl ppagrtltvf rllleanlsv yaqdqaqlgl nddgvivliv rvpldddvdg
121 awicdllahy aehgrywnnn ifvahdemfe giatgnylwl ra
Protein 2 (HpaC from Xanthomonas campestris pv. vesicatoria):
1 mrkpplrhvr ilpvsgalqr paapatpars alrssflqlr qrlrsaqlal pcmvlppqcd
61 edrpgpdaee gfteahdsvp vqtdpplrie gtkhqepsqg nddgavgrqi atewirtqra
121 hmaidhialr vaefcnaqpv rsagsweawl aidqevvaqt tlflrlspdq lslrfntssp
181 darevlwcgk qrleaaltst lsstlqisie vv
Protein 2 (HpaD from Xanthomonas campestris pv. vesicatoria):
1 vklssdigta asrgaashpp vqptqaedva apreeraptg plaglasssa alrgrrasla
61 grasphadee gamlggshrs dssqssqasd atfytaqvvs pareidtpdv paaaatyaer
121 staaaaevka qlrarldalp faapseeqta lqasylewad arvqerinaf gpdagyqavg
181 dmktagtkaa lpiayeclrs fiigamripv glatgaayas rrpadaeels tamvagvaag
241 sasytsdtll ipamdrrapv snlprfqaid pkilvpdppp vileitaegk rftrpgenna
301 ptladlkaqt ydrrlgitqr qstlddksld tlllkpvina gfnaarrtgg epglltpvgq
361 wglsalaigg agvvqkalle tgkavartgq mrvpdlvgge qrlnlfalal pdkarrpaqw
421 sdavhfppty lldtgkeala larqgfnsan avattardll trhmlsnvma sfgpmgagri
481 itaplrrgsh irvageavns tavvvqqavq tlfndtfwna lkakngants qaarldnera
541 alaaehqrti ertlealaep vdqaiarlsg ptpaeaeram eegmraapgp gplgqtlrta
601 lqtlrteigt qsvsiatida vrtalregws qtfsgvprda atqaldgqlq tlkralhdse
661 alrqwqsgra
Protein 2 (HpaE from Xanthomonas campestris pv. vesicatoria):
1 maqqlglpan saglallcpm apvalsethl amskpdtras alacspiqvw reiaglscrl
61 tamadtaqnk grrrlmvytv htrdgs
Protein 3 (HpaF from Xanthomonas campestris pv. vesicatoria):
1 mfnvnrllrs rprtdnadqa paqdspsrqp snaegllspl larprrreat ssahtstprn
61 aaqgrlfrsp lhpssqpael agassapprs iehdiddwla qslpmaervq tgynlhdgqr
121 dtsrevlqsv adairraath hgtalvfdyg lpattlpdai grleelqklt lihtsrcqta
181 wgscassaiy rslvhra
Protein 4 (HpaG from Xanthomonas campestris pv. vesicatoria):
1 mvpldelpad lgrmqglrnl slggghyarl parivelsrl selrmshssh frqlpenigl
61 mqglrsleva snskleqlpg sltqlhrlek ldlssnrrla hlpedigqlr gltelslrsc
121 talqqlpdsv gdlaqlqlld lrdtglqtlp qslarlpaqc dikvpdhlad rllqirdper
181 aqrqaqraaq rlaerrrrap vpaaqqagss wnrvpeftrv lrsvdadlge rfekwtqglm
241 qnarmfgasi tsadmplldq vvaeairspe frssfgqfls dhtiktlnld gmtqvggrgp
301 avrgdaktaf aemlkhklmh tqdhetalgl llealrnsdl glsrqtllrs rneltgrvem
361 wpplkayism hdvegkaaqd aaitwamaql deahegvige aeakqeseqa qananrfier
421 rapvllqewg ih
Protein 5 (HpaH from Xanthomonas campestris pv. vesicatoria):
1 mraqwsgrgr ragagpqril faaalacaap faradcfeea agyqhvnpwv lraiawqesr
61 gradaihrnn ngtvdygkmq insihlrrls gygiskdalm qpcvsvyvaa wrlremtnky
121 gntwaavgay hsetpgerdk yahaihsill rrgvide
Protein 6 (HpaP from Xanthomonas axonopodis pv. citri):
1 mrilpvsgal qrqaapatpa rsaqrssflq lrqrlrsaql alpcmvlppq cdedrpepda
61 edrfteahdg apattdpalp vdgtkyqepl qgtdngavgr hiatewirtq raqmaidhia
121 lrvaefcnat pvrsagswea wldidqglva qttlflrlsp dqlslrfnts spdarellwc
181 grqrleaaln stlsstlqis ievv
Latest update: October 15, 2009 Ralf Koebnik
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